URL: http://code.google.com/p/perm/
Proper Citation: PerM (RRID:SCR_004223)
Description: THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Software package to perform highly efficient genome scale alignments for hundreds of millions of short reads produced by the ABI SOLiD and Illumina sequencing platforms. It capable of providing full sensitivity for alignments within 4 mismatches for 50bp SOLID reads and 9 mismatches for 100bp Illumina reads.Efficient mapping of short sequencing reads with periodic full sensitive spaced seeds.
Synonyms: PERiodic seed Mapping, Periodic seed Mapping
Resource Type: software resource
Defining Citation: PMID:19675096, DOI:10.1093/bioinformatics/btp486
Keywords: Short sequencing mapping, short sequencing read, next-generation sequencing, genome, alignment, short read, abi, solid, illumina, bio.tools
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